Basic Information
Locus ID:
gene-QOZ80_1AG0031990
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
FBD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 46766426 | 46768231 | - | gene-QOZ80_1AG0031990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 59,556.95 Da | 47.46 | 89.52 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 89 | 132 | 5.6E-8 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 210 | 402 | 1.96E-8 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 86 | 139 | 1.27E-11 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 187 | 528 | 2.1E-9 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 80 | 129 | 1.0E-6 | - |
| SMART | SM00256 | fbox_2 | 93 | 133 | 0.001 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 87 | 127 | 9.788908 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 52 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10400.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_034593595.1 | F-box/LRR-repeat protein At4g14103-like isoform X1 [Setaria viridis] | 0 |
| Q9SV82 | FBD-associated F-box protein At4g10400 OS=Arabidopsis thaliana OX=3702 GN=At4g10400 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2T7DH74 | F-box domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G171900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 10 | AH02.3059, AH02.3061, AH06.1307, BH02.3141, BH02.3142 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0031990, gene-QOZ80_1BG0082200 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0286570.1, HORVU.MOREX.r3.3HG0286590.1 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_055442, gene-QYE76_055443, gene-QYE76_055444 ... |
| Poaceae | Oryza coarctata | 3 | Oco01G019960, Oco01G019970, Oco02G019800 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g52970.1, LOC_Os01g52980.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G264700 |
| Poaceae | Puccinellia tenuiflora | 7 | Pt_Chr0505500, Pt_Chr0506047, Pt_Chr0506051, Pt_Chr0602100 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G010550, Chr03G015420, Chr05G022840, Chr08G015490 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G464000, Tel3E01G464100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG041760, gene_TRIDC3AG041770 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G282200.1, TraesCS3A02G282300.1 ... |