Basic Information
Locus ID:
gene-QOZ80_1AG0031720
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 46618851 | 46623293 | + | gene-QOZ80_1AG0031720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 86,238.55 Da | 54.89 | 74.51 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 560 | 592 | 4.9E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 643 | 676 | 0.25 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 33 | 248 | 7.77E-14 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 467 | 779 | 1.97E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 444 | 781 | 2.0E-119 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 32 | 251 | 9.5E-21 | - |
| SMART | SM00320 | WD40_4 | 638 | 676 | 0.0017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 552 | 592 | 1.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 595 | 634 | 0.29 | IPR001680 |
| SMART | SM00320 | WD40_4 | 685 | 724 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 740 | 779 | 5.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 510 | 549 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 461 | 499 | 1.3 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 559 | 594 | 10.574686 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 239 | 10.336914 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 645 | 678 | 9.678328 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 559 | 601 | 13.348998 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 645 | 678 | 11.577833 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 579 | 593 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 663 | 677 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 536 | 550 | 2.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 579 | 593 | 2.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 663 | 677 | 2.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| Coils | Coil | Coil | 243 | 272 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53090.1 | SPA1-related 4. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_002456276.1 | protein SPA1-RELATED 4 [Sorghum bicolor] | 0 |
| Q94BM7 | Protein SPA1-RELATED 4 OS=Arabidopsis thaliana OX=3702 GN=SPA4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VID6 | Protein kinase domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_17134 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology