Basic Information
Locus ID:
gene-QOZ80_1AG0026220
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 41770172 | 41774234 | + | gene-QOZ80_1AG0026220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 39,732.73 Da | 39.36 | 101.47 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 224 | 321 | 8.9E-20 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 170 | 229 | 1.2E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 97 | 156 | 6.1E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 67 | 8.6E-12 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 29 | 235 | 4.86E-46 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 224 | 323 | 4.51E-28 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 187 | 1.6E-46 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 218 | 357 | 5.0E-32 | - |
| SMART | SM00369 | LRR_typ_2 | 119 | 143 | 13.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 95 | 118 | 160.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 74 | 351 | 3.9E-4 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 216 | 239 | 57.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 168 | 192 | 190.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 121 | 144 | 7.034293 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 74 | 375 | 17.941006 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 232 | 244 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47580.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_022682124.1 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Setaria italica] | 0 |
| C0LGP4 | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana OX=3702 GN=At3g47570 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6QZD2 | LRR receptor-like serine/threonine-protein kinase EFR isoform X3 OS=Panicum miliaceum OX=4540 GN=C2845_PM08G05060 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0009830, gene-QOZ80_1AG0026220 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7616 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000033l.39 |