HalophFGD

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Basic Information
Locus ID: gene-QOZ80_1AG0024230
Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504
Genome Assembly: GCA_032690845.1
Description: GAG-pre-integrase domain
Maps and Mapping Data
Chromosome Start End Strand ID
chr1A 38774492 38781559 + gene-QOZ80_1AG0024230
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.57 181,633.52 Da 44.26 76.85 -0.46
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd09272 RNase_HI_RT_Ty1 1431 1570 9.89733E-67 -
Pfam PF00665 Integrase core domain 704 803 5.7E-13 IPR001584
Pfam PF13976 GAG-pre-integrase domain 622 688 8.6E-14 IPR025724
Pfam PF07727 Reverse transcriptase (RNA-dependent DNA polymerase) 1103 1346 8.3E-98 IPR013103
Pfam PF00098 Zinc knuckle 434 450 3.5E-6 IPR001878
Pfam PF14223 gag-polypeptide of LTR copia-type 225 359 7.8E-11 -
Pfam PF01215 Cytochrome c oxidase subunit Vb 1580 1642 1.6E-10 IPR002124
SUPERFAMILY SSF57802 Rubredoxin-like 1581 1636 9.65E-17 -
SUPERFAMILY SSF57756 Retrovirus zinc finger-like domains 416 459 1.16E-9 IPR036875
SUPERFAMILY SSF53098 Ribonuclease H-like 718 868 1.18E-45 IPR012337
SUPERFAMILY SSF56672 DNA/RNA polymerases 1103 1537 5.78E-30 IPR043502
Gene3D G3DSA:2.60.260.40 q5lls5 like domains 1581 1644 2.0E-20 -
Gene3D G3DSA:4.10.60.10 - 404 464 1.4E-7 -
Gene3D G3DSA:3.30.420.10 - 696 874 1.0E-44 IPR036397
SMART SM00343 c2hcfinal6 434 450 3.1E-5 IPR001878
ProSiteProfiles PS50158 Zinc finger CCHC-type profile. 435 450 10.42741 IPR001878
ProSiteProfiles PS50994 Integrase catalytic domain profile. 690 866 26.717726 IPR001584
ProSiteProfiles PS51359 Cytochrome c oxidase subunit Vb, zinc binding domain profile. 1530 1638 15.505176 IPR002124
MobiDBLite mobidb-lite consensus disorder prediction 387 430 - -
MobiDBLite mobidb-lite consensus disorder prediction 1000 1018 - -
MobiDBLite mobidb-lite consensus disorder prediction 1 28 - -
MobiDBLite mobidb-lite consensus disorder prediction 151 171 - -
MobiDBLite mobidb-lite consensus disorder prediction 962 1031 - -
MobiDBLite mobidb-lite consensus disorder prediction 108 171 - -
Coils Coil Coil 8 37 - -
Coils Coil Coil 90 110 - -
Gene Ontology
Biological Process:
GO:0006123 (mitochondrial electron transport, cytochrome c to oxygen) GO:0015074 (DNA integration)
Molecular Function:
GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)
Cellular Component:
GO:0005740 (mitochondrial envelope) GO:0045277 (respiratory chain complex IV)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G23160.2 - 0
RefSeq XP_040254454.2 LOW QUALITY PROTEIN: uncharacterized protein LOC109774810 [Aegilops tauschii subsp. strangulata] 0
Swiss-Prot P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 0
TrEMBL Q9AY40 Putative gag-pol polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0027P10.24 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Asteraceae Flaveria trinervia 4 Ftri18G33038, Ftri6G26243, Ftri6G34149, FtriNA26240
Brassicaceae Brassica nigra 3 BniB02g044040.2N, BniB05g046390.2N, BniB07g028240.2N
Plantaginaceae Plantago ovata 2 Pov_00029076, Pov_00039561
Poaceae Echinochloa crus-galli 7 AH01.168, AH01.4944, AH04.1262, AH05.424, AH07.1449 ...
CH03.241, CH08.965
Poaceae Eleusine coracana subsp. coracana 85 gene-QOZ80_1AG0019300, gene-QOZ80_1AG0021820 ...
gene-QOZ80_1AG0024230, gene-QOZ80_1AG0037390, gene-QOZ80_1BG0049180, gene-QOZ80_1BG0085100, gene-QOZ80_2AG0105550, gene-QOZ80_2AG0133820, gene-QOZ80_2AG0148240, gene-QOZ80_2BG0158440, gene-QOZ80_2BG0169390, gene-QOZ80_2BG0181270, gene-QOZ80_2BG0183300, gene-QOZ80_2BG0199500, gene-QOZ80_2BG0201130, gene-QOZ80_2BG0205470, gene-QOZ80_2BG0206350, gene-QOZ80_3AG0208060, gene-QOZ80_3AG0220240, gene-QOZ80_3AG0224320, gene-QOZ80_3AG0225270, gene-QOZ80_3AG0227500, gene-QOZ80_3AG0235790, gene-QOZ80_3AG0243220, gene-QOZ80_3AG0244010, gene-QOZ80_3AG0245460, gene-QOZ80_3BG0256980, gene-QOZ80_3BG0283640, gene-QOZ80_4AG0323660, gene-QOZ80_4BG0329460, gene-QOZ80_4BG0330660, gene-QOZ80_4BG0330910, gene-QOZ80_4BG0332300, gene-QOZ80_4BG0350850, gene-QOZ80_5AG0362120, gene-QOZ80_5AG0362550, gene-QOZ80_5AG0365140, gene-QOZ80_5AG0388210, gene-QOZ80_5AG0395900, gene-QOZ80_5AG0398000, gene-QOZ80_5AG0407020, gene-QOZ80_5BG0416820, gene-QOZ80_5BG0421890, gene-QOZ80_5BG0426390, gene-QOZ80_5BG0429910, gene-QOZ80_5BG0452680, gene-QOZ80_5BG0453400, gene-QOZ80_5BG0455110, gene-QOZ80_5BG0456990, gene-QOZ80_6AG0507950, gene-QOZ80_6AG0522670, gene-QOZ80_6AG0526690, gene-QOZ80_6AG0534700, gene-QOZ80_6BG0459300, gene-QOZ80_6BG0460940, gene-QOZ80_6BG0494750, gene-QOZ80_6BG0496090, gene-QOZ80_6BG0502860, gene-QOZ80_7AG0560080, gene-QOZ80_7AG0575580, gene-QOZ80_7BG0584000, gene-QOZ80_7BG0585870, gene-QOZ80_7BG0595270, gene-QOZ80_7BG0595920, gene-QOZ80_7BG0598960, gene-QOZ80_8AG0618400, gene-QOZ80_8AG0619760, gene-QOZ80_8AG0620590, gene-QOZ80_8AG0639870, gene-QOZ80_8BG0656020, gene-QOZ80_8BG0665070, gene-QOZ80_9AG0670230, gene-QOZ80_9AG0673270, gene-QOZ80_9AG0674220, gene-QOZ80_9AG0675740, gene-QOZ80_9AG0681710, gene-QOZ80_9BG0694080, gene-QOZ80_9BG0701040, gene-QOZ80_9BG0709940, gene-QOZ80_9BG0711120, gene-QOZ80_9BG0711600, gene-QOZ80_UnG0724950, gene-QOZ80_UnG0726010, gene-QOZ80_UnG0726990, gene-QOZ80_UnG0730010
Poaceae Lolium multiflorum 12 gene-QYE76_002090, gene-QYE76_004107, gene-QYE76_010998 ...
gene-QYE76_013193, gene-QYE76_029165, gene-QYE76_037880, gene-QYE76_051587, gene-QYE76_052644, gene-QYE76_053432, gene-QYE76_056804, gene-QYE76_058369, gene-QYE76_066013
Poaceae Oryza coarctata 2 Oco06G010700, Oco21G004780
Poaceae Sporobolus alterniflorus 17 Chr01G029280, Chr04G018110, Chr04G029980, Chr05G019600 ...
Chr05G026820, Chr08G012260, Chr0G001440, Chr11G014150, Chr12G014230, Chr15G010750, Chr19G011560, Chr20G012820, Chr22G007660, Chr24G012860, Chr26G013550, Chr27G000450, Chr30G002280
Poaceae Zoysia japonica 66 nbis-gene-12256, nbis-gene-12257, nbis-gene-1525 ...
nbis-gene-1526, nbis-gene-16914, nbis-gene-17541, nbis-gene-19679, nbis-gene-24621, nbis-gene-27637, nbis-gene-27673, nbis-gene-27674, nbis-gene-33940, nbis-gene-33941, nbis-gene-34280, nbis-gene-34281, nbis-gene-34507, nbis-gene-39486, nbis-gene-39685, nbis-gene-40438, nbis-gene-40687, nbis-gene-41962, nbis-gene-43787, nbis-gene-44380, nbis-gene-44391, nbis-gene-44606, nbis-gene-46358, nbis-gene-46929, nbis-gene-48847, nbis-gene-49079, nbis-gene-50718, nbis-gene-50802, nbis-gene-50849, nbis-gene-51475, nbis-gene-51633, nbis-gene-52384, nbis-gene-52833, nbis-gene-52891, nbis-gene-52892, nbis-gene-53916, nbis-gene-53917, nbis-gene-54339, nbis-gene-54582, nbis-gene-54696, nbis-gene-55542, nbis-gene-55996, nbis-gene-56037, nbis-gene-56213, nbis-gene-56371, nbis-gene-56891, nbis-gene-56941, nbis-gene-56960, nbis-gene-57547, nbis-gene-57579, nbis-gene-57604, nbis-gene-57883, nbis-gene-58199, nbis-gene-58243, nbis-gene-58244, nbis-gene-58280, nbis-gene-58281, nbis-gene-58288, nbis-gene-58660, nbis-gene-59066, nbis-gene-59072, nbis-gene-6411, nbis-gene-643
Poaceae Zoysia macrostachya 1 Zma_g3359
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