Basic Information
Locus ID:
gene-QOZ80_1AG0023620
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 38003860 | 38004612 | - | gene-QOZ80_1AG0023620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 26,680.22 Da | 36.71 | 89.68 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 176 | 238 | 4.33456E-20 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 95 | 155 | 2.0E-8 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 175 | 237 | 2.0E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 84 | 238 | 3.3E-38 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 170 | 244 | 2.7E-23 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 89 | 158 | 2.6E-17 | - |
| SMART | SM00054 | efh_1 | 176 | 204 | 7.2E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 133 | 161 | 0.051 | IPR002048 |
| SMART | SM00054 | efh_1 | 212 | 240 | 2.1E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 96 | 124 | 0.029 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 172 | 207 | 15.182896 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 129 | 164 | 10.998585 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 208 | 243 | 13.620752 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 92 | 127 | 13.258112 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 105 | 117 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 185 | 197 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 142 | 154 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 221 | 233 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 64 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_022682297.1 | probable calcium-binding protein CML14 [Setaria italica] | 0 |
| Q5ZD81 | Probable calcium-binding protein CML12 OS=Oryza sativa subsp. japonica OX=39947 GN=CML12 PE=2 SV=1 | 0 | |
| TrEMBL | K3XLL5 | Calcium-binding protein CML15 OS=Setaria italica OX=4555 GN=SETIT_5G217800v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology