Basic Information
Locus ID:
gene-QOZ80_1AG0022390
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 35739881 | 35743968 | - | gene-QOZ80_1AG0022390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 49,482.73 Da | 48.55 | 71.86 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 101 | 427 | 1.2E-45 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 99 | 428 | 6.87E-62 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 95 | 435 | 7.1E-67 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 101 | 430 | 32.778904 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 102 | 117 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 81 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51710.2 | ubiquitin-specific protease 6. Ubiquitin-specific protease 6 (UBP6). Deubiquinating enzyme. Interacts with calmodulin. | 0 |
| RefSeq | XP_004968945.1 | ubiquitin carboxyl-terminal hydrolase 6 [Setaria italica] | 0 |
| Q949Y0 | Ubiquitin carboxyl-terminal hydrolase 6 OS=Arabidopsis thaliana OX=3702 GN=UBP6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D6NMU5 | Ubiquitin carboxyl-terminal hydrolase OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d044514 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0022390, gene-QOZ80_4BG0332740 |