HalophFGD

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Basic Information
Locus ID: gene-QOZ80_1AG0022170
Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504
Genome Assembly: GCA_032690845.1
Description: Down-regulated in metastasis
Maps and Mapping Data
Chromosome Start End Strand ID
chr1A 35423572 35429646 + gene-QOZ80_1AG0022170
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
9.80 40,707.31 Da 47.53 87.14 -0.33
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
KEGG Pathway
KO Term:
K14772 (U3 small nucleolar RNA-associated protein 20)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G30990.1 ARM repeat superfamily protein. 0
RefSeq XP_034594694.1 uncharacterized protein LOC117856434 [Setaria viridis] 0
TrEMBL K3XPM0 DUF295 domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Poaceae Echinochloa crus-galli 54 AH02.2144, AH02.2145, AH02.2146, AH02.2612, AH02.2620 ...
AH04.866, AH04.867, AH04.868, AH05.1334, AH05.1335, AH05.1343, AH05.1344, AH05.1349, AH05.2587, AH05.2588, AH07.1962, AH08.1677, AH08.855, AH09.622, BH01.2799, BH02.2219, BH02.2220, BH02.2707, BH04.1362, BH04.830, BH04.834, BH05.1507, BH05.1509, BH05.1514, BH05.1516, BH05.1517, BH05.1518, BH05.1522, BH05.1523, BH07.1548, BH08.1733, CH01.2151, CH02.2060, CH02.2372, CH03.4619, CH04.1669, CH04.842, CH05.1706, CH05.1708, CH05.1714, CH05.1715, CH05.1716, CH05.1717, CH05.1721, CH05.1722, CH06.2911, CH07.1310, CH08.1868, Contig328.18
Poaceae Eleusine coracana subsp. coracana 24 gene-QOZ80_1AG0021880, gene-QOZ80_1AG0022110 ...
gene-QOZ80_1AG0022120, gene-QOZ80_1AG0022170, gene-QOZ80_1AG0022180, gene-QOZ80_1BG0071840, gene-QOZ80_1BG0072280, gene-QOZ80_1BG0072290, gene-QOZ80_1BG0072300, gene-QOZ80_2AG0111150, gene-QOZ80_2AG0111160, gene-QOZ80_2AG0111190, gene-QOZ80_2AG0111200, gene-QOZ80_2AG0111220, gene-QOZ80_2AG0111230, gene-QOZ80_2BG0164470, gene-QOZ80_2BG0164480, gene-QOZ80_2BG0164570, gene-QOZ80_2BG0164660, gene-QOZ80_2BG0164720, gene-QOZ80_2BG0164730, gene-QOZ80_2BG0164740, gene-QOZ80_6AG0549200, gene-QOZ80_6BG0502750
Poaceae Hordeum vulgare 10 HORVU.MOREX.r3.3HG0267570.1.CDS1 ...
HORVU.MOREX.r3.3HG0277250.1.CDS1, HORVU.MOREX.r3.4HG0336510.1.CDS1, HORVU.MOREX.r3.5HG0421140.1.CDS1, HORVU.MOREX.r3.5HG0421160.1.CDS1, HORVU.MOREX.r3.5HG0421170.1.CDS1, HORVU.MOREX.r3.5HG0421200.1.CDS1, HORVU.MOREX.r3.5HG0424770.1.CDS1, HORVU.MOREX.r3.5HG0424800.1.CDS1, HORVU.MOREX.r3.5HG0424810.1.CDS1
Poaceae Lolium multiflorum 9 gene-QYE76_001037, gene-QYE76_018248, gene-QYE76_038921 ...
gene-QYE76_040249, gene-QYE76_054338, gene-QYE76_054447, gene-QYE76_054448, gene-QYE76_060452, gene-QYE76_060453
Poaceae Oryza coarctata 37 Oco01G011490, Oco01G013360, Oco01G013370, Oco01G016350 ...
Oco01G016960, Oco01G021620, Oco02G013520, Oco02G017180, Oco02G022200, Oco02G022220, Oco03G008820, Oco04G009130, Oco04G009140, Oco04G009150, Oco04G009160, Oco08G003970, Oco09G012500, Oco09G015350, Oco09G015370, Oco09G015380, Oco09G017150, Oco09G017170, Oco09G017220, Oco09G017230, Oco09G017240, Oco09G017250, Oco09G017510, Oco10G012580, Oco10G012590, Oco10G015260, Oco10G015270, Oco10G017360, Oco13G002050, Oco14G002140, Oco22G008680, Oco23G005470, Oco24G005120
Poaceae Oryza sativa 39 LOC_Os01g19280.1, LOC_Os01g33650.1, LOC_Os01g40240.1 ...
LOC_Os01g47130.1, LOC_Os01g48250.1, LOC_Os01g56710.1, LOC_Os01g56740.1, LOC_Os01g56750.1, LOC_Os02g21220.1, LOC_Os02g21230.1, LOC_Os02g21310.1, LOC_Os02g54330.1, LOC_Os05g40430.1, LOC_Os05g40450.1, LOC_Os05g40500.1, LOC_Os05g40510.1, LOC_Os05g40520.1, LOC_Os05g40550.1, LOC_Os05g40570.1, LOC_Os05g40580.1, LOC_Os05g40590.1, LOC_Os05g40610.1, LOC_Os05g40620.1, LOC_Os05g46050.1, LOC_Os05g46060.1, LOC_Os05g46150.1, LOC_Os05g46160.1, LOC_Os05g46170.1, LOC_Os05g46180.1, LOC_Os05g46190.1, LOC_Os05g49490.1, LOC_Os05g49500.1, LOC_Os05g49510.1, LOC_Os05g50020.1, LOC_Os08g27690.1, LOC_Os12g23450.1, LOC_Os12g23460.1, LOC_Os12g23514.1, LOC_Os12g23670.1
Poaceae Paspalum vaginatum 15 gene-BS78_01G196100, gene-BS78_02G166400, gene-BS78_K112000 ...
gene-BS78_03G175100, gene-BS78_03G219400, gene-BS78_04G168500, gene-BS78_05G118300, gene-BS78_05G120500, gene-BS78_05G120800, gene-BS78_06G116900, gene-BS78_09G133600, gene-BS78_09G172800, gene-BS78_09G243800, gene-BS78_09G243900, gene-BS78_K156300
Poaceae Puccinellia tenuiflora 3 Pt_Chr0301124, Pt_Chr0303031, Pt_Chr0304668
Poaceae Sporobolus alterniflorus 11 Chr02G016890, Chr03G009760, Chr05G017090, Chr05G017100 ...
Chr05G017110, Chr05G017120, Chr09G001230, Chr09G001310, Chr09G001320, Chr09G001330, Chr18G008730
Poaceae Thinopyrum elongatum 5 Tel1E01G479100, Tel3E01G364200, Tel3E01G406700 ...
Tel5E01G030600, Tel5E01G031100
Poaceae Triticum dicoccoides 2 gene_TRIDC3AG035780, gene_TRIDC3BG040150
Poaceae Triticum aestivum 30 TraesCS1A02G103400.1.cds1, TraesCS1A02G103700.1.cds1 ...
TraesCS1A02G103800.1.cds1, TraesCS1B02G305300.2, TraesCS1D02G295700.1, TraesCS2D02G218900.1.cds1, TraesCS3A02G209600.1.cds1, TraesCS3A02G239400.1.cds1, TraesCS3B02G239600.1.cds1, TraesCS3B02G268000.1.cds1, TraesCS3D02G212500.1.cds1, TraesCS3D02G239700.1.cds1, TraesCS4D02G039800.1.cds1, TraesCS5A02G013800.1.cds1, TraesCS5A02G014000.1.cds1, TraesCS5A02G381900.1, TraesCS5B02G011500.1.cds1, TraesCS5B02G011600.1.cds1, TraesCS5B02G011900.1.cds1, TraesCS5B02G012700.1, TraesCS5B02G012800.1.cds1, TraesCS5B02G385100.1.cds1, TraesCS5D02G019000.1, TraesCS5D02G019200.1, TraesCS5D02G019300.1, TraesCS5D02G019500.1.cds1, TraesCS6A02G276500.1.cds1, TraesCS6B02G194800.1.cds1, TraesCS6D02G156000.1.cds1, TraesCSU02G210700.1
Poaceae Zea mays 10 Zm00001eb167860_P001, Zm00001eb167880_P001 ...
Zm00001eb167900_P001, Zm00001eb236630_P001, Zm00001eb290000_P001, Zm00001eb290010_P001, Zm00001eb290020_P001, Zm00001eb290060_P001, Zm00001eb290070_P001, Zm00001eb290090_P001
Poaceae Zoysia japonica 4 nbis-gene-29398, nbis-gene-34023, nbis-gene-34025 ...
nbis-gene-45262
Poaceae Zoysia macrostachya 2 Zma_g15275, Zma_g8125
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.