Basic Information
Locus ID:
gene-QOZ80_1AG0020850
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 33440187 | 33444484 | - | gene-QOZ80_1AG0020850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.03 | 89,527.69 Da | 78.83 | 60.97 | -1.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 375 | 504 | 1.69775E-61 | - |
| CDD | cd00201 | WW | 22 | 50 | 0.00715855 | IPR001202 |
| Pfam | PF00397 | WW domain | 21 | 51 | 3.3E-6 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 180 | 349 | 1.2E-48 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 387 | 495 | 3.0E-33 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 228 | 511 | 3.21E-74 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 16 | 53 | 5.99E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 367 | 537 | 1.2E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 131 | 366 | 3.9E-88 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 12 | 61 | 1.7E-5 | - |
| SMART | SM00487 | ultradead3 | 175 | 378 | 4.1E-62 | IPR014001 |
| SMART | SM00490 | helicmild6 | 415 | 495 | 5.1E-35 | IPR001650 |
| SMART | SM00456 | ww_5 | 20 | 53 | 7.0E-5 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 187 | 361 | 29.974874 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 156 | 184 | 11.504468 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 19 | 53 | 11.0929 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 390 | 534 | 25.68116 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 307 | 315 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 25 | 51 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 530 | 797 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 772 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 671 | 718 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 88 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 651 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 547 | 608 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_021311702.1 | DEAD-box ATP-dependent RNA helicase 40-like isoform X1 [Sorghum bicolor] | 0 |
| Q5JKF2 | DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9VDI3 | DEAD-box ATP-dependent RNA helicase 14 OS=Eragrostis curvula OX=38414 GN=EJB05_15931 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology