Basic Information
Locus ID:
gene-QOZ80_1AG0019120
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 27361659 | 27367280 | + | gene-QOZ80_1AG0019120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.67 | 162,738.45 Da | 36.12 | 110.80 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 588 | 795 | 3.03293E-96 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 889 | 1179 | 4.99811E-77 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1202 | 1422 | 3.81547E-121 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 271 | 558 | 7.42141E-89 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 269 | 537 | 5.6E-22 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 895 | 1131 | 6.7E-24 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1221 | 1369 | 1.5E-30 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 616 | 747 | 6.1E-16 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1195 | 1429 | 9.03E-69 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 614 | 807 | 5.03E-49 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 891 | 1186 | 6.15E-47 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 263 | 562 | 5.49E-31 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 579 | 844 | 1.7E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1187 | 1440 | 1.8E-82 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 242 | 567 | 2.0E-43 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 856 | 1185 | 2.7E-52 | IPR036640 |
| SMART | SM00382 | AAA_5 | 621 | 803 | 1.7E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1230 | 1415 | 3.8E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 270 | 550 | 31.926409 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1204 | 1438 | 18.267437 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 597 | 818 | 19.854731 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 891 | 1167 | 33.306824 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 720 | 734 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 824 | 847 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_034596572.1 | putative ABC transporter C family member 15 [Setaria viridis] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9VEZ3 | ABC transporter C family member 15 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_15750 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology