Basic Information
Locus ID:
gene-QOZ80_1AG0011110
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 8289409 | 8292206 | + | gene-QOZ80_1AG0011110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 46,474.23 Da | 33.84 | 78.62 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 288 | 0.033 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 37 | 290 | 5.27E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 42 | 338 | 6.9E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 32 | 71 | 68.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 123 | 158 | 430.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 205 | 245 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 248 | 289 | 0.37 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 319 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.1 | homolog of yeast autophagy 18 (ATG18) D. | 0 |
| RefSeq | XP_039846342.1 | autophagy-related protein 18d-like [Panicum virgatum] | 0 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 0 | |
| TrEMBL | A0A835EQ15 | Autophagy-related protein 18c OS=Digitaria exilis OX=1010633 GN=HU200_031103 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology