Basic Information
Locus ID:
gene-QOZ80_1AG0010980
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 8169720 | 8170421 | - | gene-QOZ80_1AG0010980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.82 | 24,805.65 Da | 40.59 | 64.98 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 22 | 66 | 1.4579E-29 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 23 | 69 | 4.2E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 20 | 77 | 1.73E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 79 | 1.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 24 | 64 | 8.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 24 | 65 | 13.374458 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 39 | 48 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 109 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004963315.1 | E3 ubiquitin-protein ligase RNF5 isoform X2 [Setaria italica] | 0 |
| Q99942 | E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens OX=9606 GN=RNF5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9QY03 | RING-type E3 ubiquitin transferase OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology