Basic Information
Locus ID:
gene-QOZ80_1AG0010670
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
rRNA N-glycosidase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 7949872 | 7950663 | + | gene-QOZ80_1AG0010670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 28,867.74 Da | 49.65 | 88.36 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 15 | 211 | 1.2E-51 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 8 | 248 | 6.55E-49 | IPR036041 |
| Gene3D | G3DSA:4.10.470.10 | Ricin (A Subunit), domain 2 | 169 | 263 | 8.8E-31 | IPR016139 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 2 | 168 | 3.5E-48 | IPR016138 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 17 | 30 | 3.1E-8 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 194 | 211 | 3.1E-8 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 66 | 81 | 3.1E-8 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 157 | 177 | 3.1E-8 | IPR017989 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_040385856.1 | protein synthesis inhibitor II-like [Oryza brachyantha] | 0 |
| P04399 | Protein synthesis inhibitor II OS=Hordeum vulgare OX=4513 GN=RIP30A PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5VQL8 | rRNA N-glycosylase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0011580 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology