Basic Information
Locus ID:
gene-QOZ80_1AG0009880
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 7302862 | 7311243 | + | gene-QOZ80_1AG0009880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 50,485.02 Da | 35.44 | 78.86 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 181 | 449 | 9.60401E-57 | - |
| Pfam | PF00069 | Protein kinase domain | 20 | 136 | 6.0E-25 | IPR000719 |
| Pfam | PF00400 | WD domain, G-beta repeat | 416 | 449 | 0.067 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 334 | 366 | 0.067 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 248 | 275 | 0.27 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 210 | 240 | 0.0047 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 20 | 138 | 9.85E-38 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 180 | 449 | 7.69E-55 | IPR036322 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 3 | 147 | 4.1E-40 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 300 | 449 | 1.1E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 177 | 299 | 7.9E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 287 | 325 | 80.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 328 | 366 | 8.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 369 | 408 | 6.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 201 | 240 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 244 | 284 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 161 | 198 | 430.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 410 | 449 | 0.0067 | IPR001680 |
| SMART | SM00220 | serkin_6 | 6 | 233 | 1.2E-6 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 417 | 449 | 11.866497 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 251 | 293 | 9.071468 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 417 | 449 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 233 | 20.937414 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 208 | 240 | 11.878597 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 208 | 240 | 9.915599 | - |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 79 | 91 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_039802222.1 | probable serine/threonine-protein kinase PBL12 isoform X1 [Panicum virgatum] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0UBG5 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG251500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology