Basic Information
Locus ID:
gene-QOZ80_1AG0009130
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Short Name:
DDB2
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1A | 6552343 | 6554738 | - | gene-QOZ80_1AG0009130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 49,343.22 Da | 32.87 | 79.48 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 48 | 80 | 0.15 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 48 | 385 | 4.71E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 46 | 375 | 7.8E-88 | IPR015943 |
| SMART | SM00320 | WD40_4 | 182 | 221 | 0.27 | IPR001680 |
| SMART | SM00320 | WD40_4 | 339 | 371 | 74.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 80 | 0.0043 | IPR001680 |
| SMART | SM00320 | WD40_4 | 83 | 124 | 33.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 227 | 266 | 2.5E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 80 | 9.840087 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 233 | 266 | 9.606159 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 440 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 440 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58760.2 | - | 0 |
| RefSeq | XP_003568393.1 | DNA damage-binding protein 2 [Brachypodium distachyon] | 0 |
| Q84KJ3 | DNA damage-binding protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=DDB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UE53 | DNA damage-binding protein 2 OS=Eragrostis curvula OX=38414 GN=EJB05_31668 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16657 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5795 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027850 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g015970 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg1581 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3170 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003356 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72780, Sgl76319 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000036538, gene:ENSEOMG00000042418 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0004240, CQ.Regalona.r1.9BG0001430 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30061520 |
| Apiaceae | Apium graveolens | 2 | Ag4G00308, Ag6G02101 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G000190 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704021 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.2205.V1.1, AsparagusV1_08.2566.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G20624 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G58760.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013126m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g20450.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g038190.2N, BniB05g038200.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1885 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1939 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g18590 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0172s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g00020 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1100 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025559 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19189 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.713, BH02.723, CH02.825 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0009130, gene-QOZ80_1BG0057820 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0227920.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_018075 |
| Poaceae | Oryza coarctata | 1 | Oco02G001650 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g04870.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G070000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205738, Pt_Chr0205754 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr03G004100, Chr08G001020 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G101600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG006370, gene_TRIDC3BG008520 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G054700.1, TraesCS3B02G066200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb335650_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6982 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9945 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.1041, evm.TU.LG24.1044 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g21680 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.922 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-30094 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15663 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16289 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.545 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015404 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4449 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20861 |
| Salicaceae | Populus euphratica | 2 | populus_peu02006, populus_peu02010 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631605 |
| Solanaceae | Solanum chilense | 1 | SOLCI002812400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029211 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2993 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1190 |
| Zosteraceae | Zostera marina | 1 | Zosma01g40750.v3.1 |