Basic Information
Locus ID:
gene-LOC132646001
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Topless-related protein 3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 121292981 | 121304337 | + | gene-LOC132646001 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 127,163.52 Da | 42.40 | 85.15 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 475 | 508 | 0.0044 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 936 | 969 | 0.0051 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 495 | 1071 | 1.02E-42 | IPR011047 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 331 | 553 | 3.61E-22 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 766 | 984 | 2.4E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 446 | 703 | 2.3E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 985 | 1126 | 7.1E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 327 | 433 | 2.7E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1075 | 1116 | 79.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 887 | 927 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 467 | 508 | 9.4E-4 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 1.6E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 337 | 376 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 510 | 551 | 0.039 | IPR001680 |
| SMART | SM00320 | WD40_4 | 848 | 884 | 420.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 930 | 969 | 1.6E-5 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.8E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 1019 | 1061 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 600 | 640 | 0.78 | IPR001680 |
| SMART | SM00320 | WD40_4 | 554 | 597 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 393 | 436 | 55.0 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.62804 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 618 | 649 | 9.205141 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 474 | 509 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 343 | 385 | 10.040596 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 937 | 978 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.021325 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 937 | 972 | 10.574686 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 495 | 509 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.2 | TOPLESS-related 3. | 0 |
| RefSeq | XP_010313267.1 | topless-related protein 3 isoform X1 [Solanum lycopersicum] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BVH4 | Topless-related protein 3-like OS=Solanum chilense OX=4083 GN=EJD97_002906 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology