Basic Information
Locus ID:
gene-LOC132645935
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 120250759 | 120255080 | + | gene-LOC132645935 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.15 | 47,488.15 Da | 41.12 | 83.48 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 302 | 328 | 5.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 253 | 279 | 0.24 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 69 | 336 | 1.83E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 84 | 405 | 5.0E-22 | IPR015943 |
| SMART | SM00320 | WD40_4 | 245 | 284 | 0.0096 | IPR001680 |
| SMART | SM00320 | WD40_4 | 287 | 328 | 0.001 | IPR001680 |
| SMART | SM00320 | WD40_4 | 68 | 105 | 430.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 76 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_016538625.1 | LOW QUALITY PROTEIN: autophagy-related protein 18a-like [Capsicum annuum] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8E5P8 | LOW QUALITY PROTEIN: autophagy-related protein 18a-like OS=Capsicum annuum OX=4072 GN=LOC107839594 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology