Basic Information
Locus ID:
gene-LOC132645713
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 115888010 | 115891548 | - | gene-LOC132645713 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 75,201.42 Da | 33.68 | 95.91 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 417 | 679 | 8.62534E-94 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 415 | 676 | 5.9E-38 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 148 | 208 | 9.7E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 37 | 73 | 7.3E-8 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 36 | 243 | 3.57E-42 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 390 | 676 | 3.46E-56 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 182 | 257 | 3.0E-17 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 181 | 5.3E-43 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 387 | 489 | 7.1E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 490 | 684 | 8.3E-42 | - |
| SMART | SM00369 | LRR_typ_2 | 195 | 219 | 59.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 123 | 146 | 240.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 99 | 122 | 76.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 147 | 171 | 20.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 411 | 680 | 28.824186 | IPR000719 |
| Coils | Coil | Coil | 682 | 684 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45340.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_006347874.1 | PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Solanum tuberosum] | 0 |
| B8BB68 | LRR receptor kinase BAK1 OS=Oryza sativa subsp. indica OX=39946 GN=BAK1 PE=2 SV=1 | 0 | |
| TrEMBL | M1CGC6 | Leucine-rich repeat receptor kinase OS=Solanum tuberosum OX=4113 GN=102599590 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology