Basic Information
Locus ID:
gene-LOC132645676
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
phosphatase 2A 55 kDa regulatory subunit B
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 154235072 | 154247525 | + | gene-LOC132645676 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 62,999.65 Da | 54.65 | 82.19 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 39 | 433 | 7.94E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 36 | 201 | 8.2E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 214 | 530 | 2.3E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 223 | 262 | 0.66 | IPR001680 |
| SMART | SM00320 | WD40_4 | 374 | 428 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 31 | 66 | 6.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 273 | 313 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 105 | 145 | 17.0 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 10 | 526 | 1.9E-183 | IPR000009 |
| ProSitePatterns | PS01024 | Protein phosphatase 2A regulatory subunit PR55 signature 1. | 105 | 119 | - | IPR018067 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 290 | 318 | 2.4E-144 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 319 | 346 | 2.4E-144 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 347 | 374 | 2.4E-144 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 234 | 261 | 2.4E-144 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 45 | 65 | 2.4E-144 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 262 | 289 | 2.4E-144 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 92 | 120 | 2.4E-144 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 401 | 427 | 2.4E-144 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 121 | 149 | 2.4E-144 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 375 | 400 | 2.4E-144 | IPR000009 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 462 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.2 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_049365063.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Solanum verrucosum] | 0 |
| Q39247 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0V0INL2 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Solanum chacoense OX=4108 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology