Basic Information
Locus ID:
gene-LOC132645624
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Short Name:
NTMC2T4.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 113846936 | 113858825 | + | gene-LOC132645624 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 55,652.38 Da | 22.45 | 105.75 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 266 | 356 | 2.26565E-27 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 248 | 5.2E-17 | IPR039010 |
| Pfam | PF00168 | C2 domain | 264 | 359 | 1.1E-21 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 264 | 391 | 3.87E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 259 | 417 | 1.7E-30 | IPR035892 |
| SMART | SM00239 | C2_3c | 265 | 362 | 4.0E-21 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 249 | 23.343393 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 247 | 365 | 20.413786 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 328 | 336 | 3.6E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 281 | 293 | 3.6E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 306 | 319 | 3.6E-5 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 503 | - | - |
| Coils | Coil | Coil | 391 | 411 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_009619318.1 | synaptotagmin-4-like isoform X2 [Nicotiana tomentosiformis] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S4BCG6 | synaptotagmin-4-like OS=Nicotiana tabacum OX=4097 GN=LOC107806866 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology