Basic Information
Locus ID:
gene-LOC132645464
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 153941546 | 153945625 | + | gene-LOC132645464 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 46,898.29 Da | 41.20 | 92.03 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 254 | 384 | 1.04991E-60 | - |
| CDD | cd17939 | DEADc_EIF4A | 45 | 243 | 9.38213E-133 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 267 | 375 | 6.8E-29 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 66 | 227 | 4.3E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 110 | 395 | 3.02E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 250 | 414 | 5.9E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 31 | 249 | 9.8E-67 | IPR027417 |
| SMART | SM00490 | helicmild6 | 294 | 375 | 1.5E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 60 | 257 | 6.7E-56 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 41 | 69 | 10.40907 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 253 | 414 | 25.706059 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 72 | 242 | 28.65452 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 188 | 196 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_016577014.1 | eukaryotic initiation factor 4A-8 [Capsicum annuum] | 0 |
| P41381 | Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G2WKU9 | Eukaryotic initiation factor 4A-8 OS=Capsicum baccatum OX=33114 GN=CQW23_15033 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology