halophFGD

Basic Information

Locus ID: gene-LOC132645453

Species & Taxonomic ID: Lycium barbarum & 112863

Genome Assembly: GCF_019175385.1

Description: RING-like zinc finger

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	110704666	110706487	+	gene-LOC132645453

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.55	33,408.15 Da	49.22	96.14	0.03

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16454	RING-H2_PA-TM-RING	250	293	6.07807E-15	-
Pfam	PF13639	Ring finger domain	250	293	1.5E-12	IPR001841
Pfam	PF13947	Wall-associated receptor kinase galacturonan-binding	36	96	1.5E-10	IPR025287
SUPERFAMILY	SSF57850	RING/U-box	229	296	3.89E-19	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	218	298	2.8E-20	IPR013083
SMART	SM00184	ring_2	251	292	1.3E-4	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	251	293	12.282736	IPR001841

Gene Ontology

Molecular Function:

GO:0030247 (polysaccharide binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G28040.1	RING/U-box superfamily protein.	0
RefSeq	XP_015062124.1	putative RING-H2 finger protein ATL21A [Solanum pennellii]	0
Swiss-Prot	Q9C7E9	RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2	0
TrEMBL	A0A6N2B210	RING-type domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_017928 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Solanaceae	Lycium barbarum	1	gene-LOC132645453
Solanaceae	Solanum chilense	1	SOLCI004987300
Solanaceae	Solanum pennellii	1	gene-LOC107007837