Basic Information
Locus ID:
gene-LOC132645431
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 110034436 | 110039038 | + | gene-LOC132645431 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 37,063.73 Da | 45.71 | 70.95 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 179 | 307 | 1.72206E-68 | - |
| CDD | cd16571 | RING-HC_SIAHs | 63 | 101 | 2.53734E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 107 | 306 | 8.2E-81 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 58 | 105 | 7.66E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 118 | 310 | 1.96E-50 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 118 | 172 | 1.7E-17 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 173 | 306 | 1.1E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 28 | 117 | 2.4E-6 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 118 | 178 | 14.339098 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 65 | 101 | 9.346889 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_004229988.1 | E3 ubiquitin-protein ligase SINAT5 [Solanum lycopersicum] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BMQ4 | RING-type E3 ubiquitin transferase OS=Solanum chilense OX=4083 GN=EJD97_011953 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology