Basic Information
Locus ID:
gene-LOC132645290
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 153539195 | 153545041 | - | gene-LOC132645290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 45,451.64 Da | 51.64 | 69.93 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 141 | 215 | 7.11887E-52 | - |
| CDD | cd12352 | RRM1_TIA1_like | 57 | 127 | 3.12536E-34 | - |
| CDD | cd12354 | RRM3_TIA1_like | 261 | 336 | 4.14427E-33 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 263 | 330 | 1.1E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 142 | 212 | 1.0E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 57 | 123 | 8.5E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 53 | 219 | 6.59E-43 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 252 | 346 | 2.99E-20 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 137 | 239 | 6.7E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 136 | 1.1E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 240 | 340 | 2.1E-21 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 262 | 332 | 2.5E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 141 | 214 | 6.5E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 56 | 125 | 2.9E-15 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 140 | 218 | 17.011795 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 55 | 129 | 14.624039 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 261 | 336 | 14.982202 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 258 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | NP_001275419.1 | oligouridylate binding protein-like protein [Solanum tuberosum] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | Q2XPV3 | Oligouridylate binding protein OS=Solanum tuberosum OX=4113 GN=102577639 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology