Basic Information
Locus ID:
gene-LOC132645198
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 153323097 | 153325178 | + | gene-LOC132645198 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.66 | 32,205.02 Da | 67.48 | 76.44 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 111 | 154 | 1.98467E-19 | - |
| Pfam | PF13639 | Ring finger domain | 111 | 154 | 1.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 92 | 166 | 5.55E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 164 | 5.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 112 | 153 | 5.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 112 | 154 | 11.943417 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 278 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_016578510.1 | RING-H2 finger protein ATL3 [Capsicum annuum] | 0 |
| P0C035 | RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U8H576 | RING-type E3 ubiquitin transferase OS=Capsicum annuum OX=4072 GN=LOC107876044 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology