Basic Information
Locus ID:
gene-LOC132645166
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 153256728 | 153264010 | + | gene-LOC132645166 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 76,319.09 Da | 41.58 | 85.28 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 156 | 198 | 7.0E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 93 | 150 | 1.1E-6 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 412 | 680 | 7.2E-40 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 66 | 2.8E-10 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 27 | 228 | 2.13E-37 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 390 | 680 | 3.32E-68 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 487 | 700 | 6.3E-54 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 271 | 6.9E-49 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 377 | 485 | 1.2E-26 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 410 | 683 | 33.516674 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 281 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 376 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_049363430.1 | protein STRUBBELIG-RECEPTOR FAMILY 7-like [Solanum verrucosum] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G3C8F6 | Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Capsicum chinense OX=80379 GN=BC332_16198 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology