halophFGD

Basic Information

Locus ID: gene-LOC132645046

Species & Taxonomic ID: Lycium barbarum & 112863

Genome Assembly: GCF_019175385.1

Description: WD domain, G-beta repeat

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	100697040	100711323	-	gene-LOC132645046

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.69	58,590.28 Da	52.54	79.42	-0.43

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	414	455	0.21	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	339	373	0.0059	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	258	284	0.058	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	295	327	9.2E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	468	494	0.12	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	148	496	4.27E-51	IPR036322
Gene3D	G3DSA:2.130.10.10	-	405	508	1.6E-13	IPR015943
Gene3D	G3DSA:2.130.10.10	-	148	386	1.9E-36	IPR015943
SMART	SM00320	WD40_4	287	327	7.6E-6	IPR001680
SMART	SM00320	WD40_4	245	284	0.016	IPR001680
SMART	SM00320	WD40_4	458	497	0.0033	IPR001680
SMART	SM00320	WD40_4	410	455	1.0	IPR001680
SMART	SM00320	WD40_4	140	179	53.0	IPR001680
SMART	SM00320	WD40_4	334	373	0.0071	IPR001680
SMART	SM00320	WD40_4	183	224	350.0	IPR001680
PIRSF	PIRSF038135	WD_rpt_23	53	518	3.6E-196	IPR017399
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	252	293	10.575287	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	341	382	12.613797	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	294	327	9.309238	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	465	497	9.238559	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	341	375	10.337415	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	252	286	8.544697	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	294	327	11.109979	IPR001680
PRINTS	PR00320	G protein beta WD-40 repeat signature	360	374	4.6E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	314	328	4.6E-5	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	271	285	4.6E-5	IPR020472

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K11801 (DDB1- and CUL4-associated factor 11)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G03020.1	transducin family protein / WD-40 repeat family protein.
RefSeq	XP_009795043.1	PREDICTED: LEC14B homolog [Nicotiana sylvestris]
Swiss-Prot	O24467	LEC14B homolog OS=Prunus armeniaca OX=36596 PE=2 SV=1
TrEMBL	A0A1U7XZH3	LEC14B homolog OS=Nicotiana sylvestris OX=4096 GN=LOC104241789 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg27965, jg8840
Aizoaceae	Mesembryanthemum crystallinum	1	gene_4240
Amaranthaceae	Atriplex hortensis	2	Ah020659, Ah029679
Amaranthaceae	Beta vulgaris	1	BVRB_7g165700
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg16358, Sbi_jg35803, Sbi_jg51804, Sbi_jg829
Amaranthaceae	Salicornia europaea	2	Seu_jg13358, Seu_jg3896
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00019786
Amaranthaceae	Suaeda glauca	2	Sgl72037, Sgl75604
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000006827, gene:ENSEOMG00000012738 ... gene:ENSEOMG00000030023, gene:ENSEOMG00000034154, gene:ENSEOMG00000041088, gene:ENSEOMG00000046104
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0016640, CQ.Regalona.r1.3BG0016510 ... CQ.Regalona.r1.7AG0014900, CQ.Regalona.r1.7BG0016800
Anacardiaceae	Pistacia vera	2	pistato.v30011350, pistato.v30238220
Apiaceae	Apium graveolens	5	Ag10G00772, Ag2G02426, Ag5G02458, Ag8G01695, Ag9G01820
Arecaceae	Cocos nucifera	2	COCNU_01G002780, scaffold006566G000150
Arecaceae	Phoenix dactylifera	2	gene-LOC103721036, gene-LOC103724227
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.2023.V1.1, AsparagusV1_07.935.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G03224, Ftri3G19980, Ftri9G25668
Brassicaceae	Arabidopsis thaliana	1	AT4G03020.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10028659m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp6g03060.v2.2
Brassicaceae	Brassica nigra	2	BniB08g039150.2N, BniB08g045690.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G1641
Casuarinaceae	Casuarina glauca	1	Cgl06G1701
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g05240
Dunaliellaceae	Dunaliella salina	1	Dusal.0973s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate06g22820
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-6289, nbisL1-mrna-9649
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG04.239, evm.TU.LG11.1392, evm.TU.LG11.995
Plantaginaceae	Plantago ovata	1	Pov_00024805
Plumbaginaceae	Limonium bicolor	1	Lb8G36260
Poaceae	Echinochloa crus-galli	7	AH05.2503, AH05.775, BH02.1792, BH05.1002, BH05.2585 ... CH05.1145, CH05.2695
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0017480, gene-QOZ80_1BG0066380 ... gene-QOZ80_5AG0373540, gene-QOZ80_5AG0405310, gene-QOZ80_5BG0422710, gene-QOZ80_5BG0453440
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0014190.1, HORVU.MOREX.r3.1HG0019410.1 ... HORVU.MOREX.r3.1HG0062700.1
Poaceae	Lolium multiflorum	2	gene-QYE76_009485, gene-QYE76_013335
Poaceae	Oryza coarctata	5	Oco01G010620, Oco02G011360, Oco09G009060, Oco10G002120 ... Oco10G009530
Poaceae	Oryza sativa	3	LOC_Os01g28680.1, LOC_Os05g05210.1, LOC_Os05g33710.1
Poaceae	Paspalum vaginatum	2	gene-BS78_09G040800, gene-BS78_09G141300
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0500549, Pt_Chr0505205, Pt_Chr0506203
Poaceae	Sporobolus alterniflorus	5	Chr09G008020, Chr13G016820, Chr18G001260, Chr18G009000 ... Chr22G008650
Poaceae	Thinopyrum elongatum	4	Tel1E01G134700, Tel1E01G170400, Tel1E01G422800 ... Tel5E01G051200
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG008920, gene_TRIDC1AG012340 ... gene_TRIDC1AG038120, gene_TRIDC1BG011120, gene_TRIDC1BG015210, gene_TRIDC1BG042990
Poaceae	Triticum aestivum	9	TraesCS1A02G065300.2, TraesCS1A02G086800.2 ... TraesCS1A02G255000.1, TraesCS1B02G083400.1, TraesCS1B02G105200.2, TraesCS1B02G263400.2, TraesCS1D02G066000.1, TraesCS1D02G088200.1, TraesCS1D02G254400.1
Poaceae	Zea mays	2	Zm00001eb349670_P002, Zm00001eb354420_P001
Poaceae	Zoysia japonica	2	nbis-gene-18207, nbis-gene-52838
Poaceae	Zoysia macrostachya	3	Zma_g26411, Zma_g26852, Zma_g27685
Portulacaceae	Portulaca oleracea	4	evm.TU.LG03.2022, evm.TU.LG03.761, evm.TU.LG12.968 ... evm.TU.LG14.323
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g10740
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_3_RagTag.521, evm.TU.Scaffold_9_RagTag.875
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-1442, nbisL1-mrna-21349
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-19926, nbisL1-mrna-21386
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-18431, nbisL1-mrna-6245
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.546, evm.TU.utg000019l.900
Rhizophoraceae	Kandelia obovata	2	Maker00009533, Maker00012425
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-1530, nbisL1-mrna-6297
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-2052, nbisL1-mrna-5182
Salicaceae	Populus euphratica	4	populus_peu07816, populus_peu22033, populus_peu22037 ... populus_peu27185
Solanaceae	Lycium barbarum	2	gene-LOC132605607, gene-LOC132645046
Solanaceae	Solanum chilense	2	SOLCI001973800, SOLCI002921100
Solanaceae	Solanum pennellii	2	gene-LOC107008401, gene-LOC107022037
Tamaricaceae	Reaumuria soongarica	1	gene_8484
Tamaricaceae	Tamarix chinensis	1	TC12G1524
Zosteraceae	Zostera marina	1	Zosma01g20360.v3.1