Basic Information
Locus ID:
gene-LOC132644997
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
E3 ubiquitin-protein ligase LUL4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 99460589 | 99469664 | - | gene-LOC132644997 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 40,726.42 Da | 56.39 | 71.52 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 304 | 344 | 1.50049E-25 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 303 | 349 | 9.1E-16 | - |
| SUPERFAMILY | SSF101447 | Formin homology 2 domain (FH2 domain) | 47 | 145 | 8.11E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 304 | 350 | 1.11E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 293 | 355 | 4.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 305 | 343 | 2.7E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 305 | 344 | 11.382803 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | NP_001265959.1 | Hop-interacting protein THI037 [Solanum lycopersicum] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | G8Z265 | RING-type E3 ubiquitin transferase OS=Solanum lycopersicum OX=4081 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology