Basic Information
Locus ID:
gene-LOC132644927
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 96979652 | 96983385 | + | gene-LOC132644927 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.59 | 58,922.49 Da | 55.26 | 54.28 | -1.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 390 | 475 | 1.6E-19 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 491 | 522 | 5.0E-7 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 390 | 475 | 1.6E-30 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 448 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 158 | 241 | - | - |
| Coils | Coil | Coil | 386 | 416 | - | - |
| Coils | Coil | Coil | 428 | 455 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_006349179.1 | PREDICTED: uncharacterized protein LOC102597315 [Solanum tuberosum] | 0 |
| TrEMBL | M1AI76 | PAPA-1 domain-containing protein OS=Solanum tuberosum OX=4113 GN=102597315 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology