Basic Information
Locus ID:
gene-LOC132644723
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 133852292 | 133863987 | + | gene-LOC132644723 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 46,375.49 Da | 46.38 | 74.69 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 345 | 387 | 2.40002E-10 | - |
| Pfam | PF13639 | Ring finger domain | 344 | 387 | 3.6E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 344 | 393 | 1.79E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 295 | 392 | 8.2E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 345 | 387 | 10.984472 | IPR001841 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 345 | 386 | - | IPR019786 |
| Coils | Coil | Coil | 300 | 320 | - | - |
| Coils | Coil | Coil | 189 | 209 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009765684.1 | PREDICTED: uncharacterized protein LOC104217204 [Nicotiana sylvestris] | 0 |
| TrEMBL | A0A1U7VTG6 | uncharacterized protein LOC104217204 OS=Nicotiana sylvestris OX=4096 GN=LOC104217204 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644723 |
| Solanaceae | Solanum chilense | 1 | SOLCI007334600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC114075577 |