Basic Information
Locus ID:
gene-LOC132644378
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 81996044 | 82025843 | + | gene-LOC132644378 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 101,439.41 Da | 46.88 | 83.09 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 197 | 332 | 2.38855E-53 | - |
| CDD | cd17920 | DEXHc_RecQ | 2 | 196 | 5.91505E-94 | - |
| Pfam | PF14493 | Helix-turn-helix domain | 653 | 748 | 1.2E-19 | IPR029491 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 16 | 175 | 1.7E-20 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 547 | 612 | 2.5E-13 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 216 | 322 | 2.8E-19 | IPR001650 |
| Pfam | PF09382 | RQC domain | 401 | 498 | 7.7E-20 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 336 | 396 | 7.1E-10 | IPR032284 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 401 | 499 | 5.3E-22 | IPR036390 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 53 | 337 | 3.81E-56 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 543 | 624 | 1.07E-16 | IPR010997 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 195 | 3.2E-74 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 398 | 522 | 3.3E-31 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 540 | 623 | 2.9E-16 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 197 | 397 | 1.7E-53 | IPR027417 |
| SMART | SM00487 | ultradead3 | 10 | 201 | 5.3E-31 | IPR014001 |
| SMART | SM00490 | helicmild6 | 242 | 323 | 4.0E-24 | IPR001650 |
| SMART | SM00956 | RQC_2 | 404 | 513 | 2.3E-22 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 4 | 455 | 6.2E-149 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 213 | 376 | 19.008766 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 22 | 189 | 23.957832 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 543 | 623 | 18.091427 | IPR002121 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_019250433.1 | PREDICTED: uncharacterized protein LOC109229449 [Nicotiana attenuata] | 0 |
| P71359 | ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=recQ PE=3 SV=1 | 0 | |
| TrEMBL | A0A1J6IKP9 | ATP-dependent DNA helicase OS=Nicotiana attenuata OX=49451 GN=RECQL4B PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology