Basic Information
Locus ID:
gene-LOC132644366
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 109589945 | 109593289 | + | gene-LOC132644366 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 54,354.66 Da | 49.62 | 107.71 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04826 | Armadillo-like | 13 | 99 | 5.8E-5 | IPR006911 |
| SUPERFAMILY | SSF48371 | ARM repeat | 13 | 448 | 1.68E-44 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 128 | 340 | 4.7E-23 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 361 | 494 | 1.7E-13 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 5 | 127 | 2.1E-14 | IPR011989 |
| SMART | SM00185 | arm_5 | 409 | 449 | 27.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 203 | 244 | 130.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 365 | 405 | 140.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 70 | 112 | 16.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 290 | 331 | 19.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 29 | 69 | 0.052 | IPR000225 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68940.1 | Armadillo/beta-catenin-like repeat family protein. | 0 |
| RefSeq | XP_019239027.1 | PREDICTED: U-box domain-containing protein 44-like [Nicotiana attenuata] | 0 |
| Q9CAA7 | Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=PUB42 PE=3 SV=1 | 0 | |
| TrEMBL | A0A1J6JUD8 | RING-type E3 ubiquitin transferase OS=Nicotiana attenuata OX=49451 GN=PUB44_0 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10276, jg29483 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30006200, pistato.v30165330 |
| Apiaceae | Apium graveolens | 1 | Ag11G03591 |
| Arecaceae | Cocos nucifera | 1 | scaffold021460G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719070 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.421.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G26855, Ftri5G33561 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1296 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1451 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2849 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.629 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21588 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9626 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7428 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.191 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017527 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1687 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5412 |
| Salicaceae | Populus euphratica | 6 | populus_peu27526, populus_peu27527, populus_peu27984 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132632125, gene-LOC132644366, gene-LOC132645405 |
| Solanaceae | Solanum chilense | 2 | SOLCI000591400, SOLCI005051300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008446 |