Basic Information
Locus ID:
gene-LOC132644315
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 104788657 | 104789955 | + | gene-LOC132644315 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.19 | 49,477.29 Da | 53.78 | 55.79 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16481 | RING-H2_TTC3 | 379 | 421 | 6.59906E-16 | - |
| Pfam | PF13639 | Ring finger domain | 378 | 421 | 3.5E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 363 | 427 | 2.72E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 343 | 426 | 3.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 379 | 420 | 9.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 379 | 421 | 12.430266 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 260 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 304 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67120.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_016582152.1 | E3 ubiquitin ligase BIG BROTHER-related-like [Capsicum annuum] | 0 |
| Q0VD51 | E3 ubiquitin-protein ligase RNF13 OS=Bos taurus OX=9913 GN=RNF13 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U8HFF9 | E3 ubiquitin ligase BIG BROTHER-related-like OS=Capsicum annuum OX=4072 GN=LOC107879702 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 2 | gene-LOC132608337, gene-LOC132644315 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025415 |