Basic Information
Locus ID:
gene-LOC132644110
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein 2-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 150945653 | 150951566 | + | gene-LOC132644110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.20 | 47,985.05 Da | 58.88 | 81.74 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 233 | 276 | 3.5782E-24 | - |
| CDD | cd02123 | PA_C_RZF_like | 20 | 163 | 3.98105E-50 | IPR044744 |
| Pfam | PF02225 | PA domain | 62 | 142 | 5.9E-9 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 233 | 276 | 2.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 213 | 288 | 5.59E-20 | - |
| SUPERFAMILY | SSF52025 | PA domain | 82 | 151 | 2.35E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 195 | 281 | 2.3E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 22 | 156 | 5.9E-28 | - |
| SMART | SM00184 | ring_2 | 234 | 275 | 2.7E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 234 | 276 | 12.415513 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_016574867.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Capsicum annuum] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G3C821 | Receptor-like proteiny region, transmembrane domain-and RING domain-containing protein 2 OS=Capsicum chinense OX=80379 GN=BC332_16104 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology