Basic Information
Locus ID:
gene-LOC132643884
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 16940571 | 16941182 | + | gene-LOC132643884 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 23,329.29 Da | 57.34 | 87.29 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 103 | 146 | 1.91993E-15 | - |
| Pfam | PF13639 | Ring finger domain | 103 | 146 | 9.9E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 103 | 156 | 3.03E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 152 | 8.0E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 104 | 145 | 1.1E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 104 | 146 | 11.825393 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27940.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_016470452.1 | PREDICTED: RING-H2 finger protein ATL66-like [Nicotiana tabacum] | 0 |
| Q9SJJ7 | RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1S4A199 | RING-type E3 ubiquitin transferase OS=Nicotiana tabacum OX=4097 GN=LOC107792732 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag11G04249 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC108511277 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G16326 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016119 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.283 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12640 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.177 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18967 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11790 |
| Salicaceae | Populus euphratica | 1 | populus_peu02165 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643884 |
| Solanaceae | Solanum chilense | 1 | SOLCI001724800 |