Basic Information
Locus ID:
gene-LOC132643649
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Rho GTPase-activating protein 7-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 25335885 | 25388495 | + | gene-LOC132643649 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 95,704.65 Da | 52.73 | 77.55 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 181 | 318 | 7.50484E-35 | - |
| CDD | cd00821 | PH | 21 | 120 | 8.44847E-11 | - |
| Pfam | PF00169 | PH domain | 20 | 124 | 1.4E-11 | IPR001849 |
| Pfam | PF00620 | RhoGAP domain | 181 | 325 | 1.7E-31 | IPR000198 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 610 | 690 | 4.6E-21 | IPR025757 |
| SUPERFAMILY | SSF50729 | PH domain-like | 19 | 123 | 4.38E-17 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 181 | 375 | 1.16E-34 | IPR008936 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 149 | 374 | 1.2E-41 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 10 | 126 | 1.6E-16 | IPR011993 |
| SMART | SM00324 | RhoGAP_3 | 178 | 369 | 1.6E-27 | IPR000198 |
| SMART | SM00233 | PH_update | 19 | 127 | 1.1E-14 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 18 | 125 | 14.6635 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 172 | 372 | 29.658096 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 434 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 519 | 540 | - | - |
| Coils | Coil | Coil | 600 | 634 | - | - |
| Coils | Coil | Coil | 201 | 221 | - | - |
| Coils | Coil | Coil | 659 | 693 | - | - |
| Coils | Coil | Coil | 821 | 848 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_006356356.1 | PREDICTED: rho GTPase-activating protein 7 isoform X1 [Solanum tuberosum] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G2YFL1 | Rho GTPase-activating protein 7 OS=Capsicum annuum OX=4072 GN=T459_27986 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology