Basic Information
Locus ID:
gene-LOC132643553
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 18854439 | 18864232 | - | gene-LOC132643553 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 72,956.58 Da | 45.02 | 96.85 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 264 | 306 | 4.08771E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 470 | 508 | 3.6E-8 | IPR000225 |
| Pfam | PF04564 | U-box domain | 260 | 330 | 3.3E-22 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 387 | 426 | 5.1E-11 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 552 | 591 | 3.8E-4 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 358 | 637 | 7.12E-49 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 256 | 336 | 3.28E-32 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 357 | 474 | 1.4E-25 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 475 | 636 | 2.5E-28 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 7 | 121 | 8.8E-11 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 260 | 333 | 3.8E-32 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 263 | 326 | 1.7E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 551 | 591 | 54.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 387 | 427 | 2.7E-7 | IPR000225 |
| SMART | SM00185 | arm_5 | 469 | 509 | 0.041 | IPR000225 |
| SMART | SM00185 | arm_5 | 428 | 468 | 3.1 | IPR000225 |
| SMART | SM00185 | arm_5 | 510 | 550 | 200.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 398 | 440 | 13.002399 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 259 | 333 | 45.778263 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 439 | 481 | 8.627399 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 635 | 666 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 641 | 666 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_016547749.1 | U-box domain-containing protein 13 [Capsicum annuum] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G3BA00 | RING-type E3 ubiquitin transferase OS=Capsicum chinense OX=80379 GN=BC332_28540 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology