Basic Information
Locus ID:
gene-LOC132643519
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 16984245 | 16986282 | - | gene-LOC132643519 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 38,250.62 Da | 29.20 | 86.77 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02242 | cupin_11S_legumin_N | 4 | 172 | 2.6344E-67 | - |
| CDD | cd02243 | cupin_11S_legumin_C | 198 | 353 | 5.58303E-79 | - |
| Pfam | PF00190 | Cupin | 199 | 337 | 1.1E-21 | IPR006045 |
| Pfam | PF00190 | Cupin | 10 | 155 | 1.0E-28 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 15 | 345 | 6.35E-51 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 195 | 356 | 8.8E-51 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 3 | 194 | 8.5E-37 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 3 | 157 | 2.4E-30 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 195 | 339 | 3.7E-15 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 276 | 291 | 5.0E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 316 | 333 | 5.0E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 294 | 312 | 5.0E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 258 | 274 | 5.0E-15 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 211 | 231 | 5.0E-15 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G07750.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_049379020.1 | 12S seed storage globulin 1-like [Solanum stenotomum] | 0 |
| Q8GZP6 | 11S globulin seed storage protein Ana o 2.0101 (Fragment) OS=Anacardium occidentale OX=171929 PE=1 SV=1 | 0 | |
| TrEMBL | M1B9J5 | Nutrient reservoir OS=Solanum tuberosum OX=4113 GN=102587356 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology