Basic Information
Locus ID:
gene-LOC132642836
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 140375073 | 140376788 | + | gene-LOC132642836 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 39,429.87 Da | 38.59 | 90.53 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 43 | 80 | 9.1E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 43 | 95 | 1.7E-9 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 135 | 268 | 1.96E-6 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 38 | 82 | 1.4E-5 | - |
| SMART | SM00256 | fbox_2 | 41 | 81 | 7.5E-7 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47790.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_009609989.1 | putative F-box protein At1g50870 [Nicotiana tomentosiformis] | 0 |
| Q9FZF8 | Putative F-box protein At1g47790 OS=Arabidopsis thaliana OX=3702 GN=At1g47790 PE=4 SV=1 | 0 | |
| TrEMBL | A0A1S4AXH6 | putative F-box protein At1g50870 OS=Nicotiana tabacum OX=4097 GN=LOC107802372 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 5 | gene-LOC132607706, gene-LOC132639922, gene-LOC132639923 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI000279300, SOLCI004455400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019227 |