Basic Information
Locus ID:
gene-LOC132642582
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 104188173 | 104189646 | + | gene-LOC132642582 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.55 | 48,331.85 Da | 61.39 | 86.64 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 130 | 173 | 4.17282E-21 | - |
| Pfam | PF13639 | Ring finger domain | 130 | 173 | 6.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 127 | 178 | 6.6E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 105 | 182 | 3.8E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 131 | 172 | 8.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 131 | 173 | 12.592549 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009785883.1 | PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Nicotiana sylvestris] | 0 |
| Q5XF85 | E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1S3YI16 | E3 ubiquitin-protein ligase ATL42-like OS=Nicotiana tabacum OX=4097 GN=LOC107776385 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology