Basic Information
Locus ID:
gene-LOC132642409
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Belongs to the chaperonin (HSP60) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 25090102 | 25094618 | - | gene-LOC132642409 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 31,028.63 Da | 44.12 | 84.23 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 4 | 140 | 4.9E-18 | IPR002423 |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 2 | 65 | 1.28E-19 | IPR027409 |
| SUPERFAMILY | SSF48592 | GroEL equatorial domain-like | 82 | 144 | 3.36E-10 | IPR027413 |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 3 | 62 | 1.7E-56 | IPR027409 |
| Gene3D | G3DSA:3.30.260.10 | - | 63 | 99 | 1.7E-56 | IPR027410 |
| Gene3D | G3DSA:1.10.560.10 | - | 100 | 152 | 1.7E-56 | IPR027413 |
| ProSitePatterns | PS00296 | Chaperonins cpn60 signature. | 94 | 105 | - | IPR018370 |
| PRINTS | PR00298 | 60kDa chaperonin signature | 39 | 64 | 1.0E-24 | IPR001844 |
| PRINTS | PR00298 | 60kDa chaperonin signature | 87 | 108 | 1.0E-24 | IPR001844 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 286 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23990.1 | heat shock protein 60. mitochondrial chaperonin HSP. assist in rapid assembly of the oligomeric protein structures in the mitochondria. | 0 |
| RefSeq | XP_009800688.1 | PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana sylvestris] | 0 |
| P29197 | Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CPN60 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1S3XY51 | chaperonin CPN60-2, mitochondrial OS=Nicotiana tabacum OX=4097 GN=LOC107770118 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 52 | gene-LOC132601505, gene-LOC132601643, gene-LOC132601653 ... |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107009182, gene-LOC107016531, gene-LOC114076118 |