Basic Information
Locus ID:
gene-LOC132642284
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 11047737 | 11049973 | - | gene-LOC132642284 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.26 | 26,251.17 Da | 37.90 | 101.76 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14733 | BACK | 162 | 203 | 0.00403151 | - |
| CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 59 | 144 | 9.28515E-9 | - |
| Pfam | PF00651 | BTB/POZ domain | 58 | 159 | 8.3E-15 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 44 | 159 | 1.83E-13 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 36 | 160 | 3.1E-14 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 161 | 233 | 1.4E-10 | - |
| SMART | SM00225 | BTB_4 | 59 | 161 | 3.2E-10 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 59 | 129 | 13.570437 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G01640.1 | BTB/POZ domain-containing protein. Putative role in flower development. Comparison of SALK_011721C to Columbia wild type resulted in a trend toward earlier flowering in the mutant (P=0.1) (Stapleton and Woodruff 2009, personal communication). | 0 |
| RefSeq | XP_016573427.1 | BTB/POZ domain-containing protein At1g01640-like [Capsicum annuum] | 0 |
| Q9LQ95 | BTB/POZ domain-containing protein At1g01640 OS=Arabidopsis thaliana OX=3702 GN=At1g01640 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8GX98 | BTB/POZ domain-containing protein At1g01640-like OS=Capsicum annuum OX=4072 GN=LOC107871138 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14211 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17058 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035098 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g029750 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21546, Sbi_jg22273 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16202 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008794 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl62744, Sgl62746, Sgl67361, Sgl67363 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017089, gene:ENSEOMG00000021017 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0020710 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30178010 |
| Apiaceae | Apium graveolens | 2 | Ag10G01376, Ag8G00406 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G004190, COCNU_12G006390 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708873, gene-LOC103714402 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.423.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G26850 |
| Brassicaceae | Arabidopsis thaliana | 8 | AT1G01640.1, AT2G05330.1, AT2G40440.1, AT2G40450.1 ... |
| Brassicaceae | Eutrema salsugineum | 18 | Thhalv10006174m.g.v1.0, Thhalv10011969m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 9 | Sp1g00680.v2.2, Sp1g34650.v2.2, Sp1g40990.v2.2 ... |
| Brassicaceae | Brassica nigra | 14 | BniB01g004890.2N, BniB01g004900.2N, BniB01g008410.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0054 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0057, Cgl02G0058 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g17090 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g31760, gene.Thate01g31790 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3173 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1728 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040630 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02695 |
| Poaceae | Echinochloa crus-galli | 7 | AH03.2334, AH04.60, AH05.54, BH04.66, BH05.18, CH04.153 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3BG0294740, gene-QOZ80_9AG0672320 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0351750.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_020567, gene-QYE76_064963 |
| Poaceae | Oryza coarctata | 1 | Ocoptg000061lG000500 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g02070.1, LOC_Os12g02030.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G010700, gene-BS78_08G003600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103821 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr03G010320, Chr04G020880, Chr06G022500, Chr16G008310 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G189200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG031370, gene_TRIDC4BG018330 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G196800.2, TraesCS4B02G118500.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb195170_P001, Zm00001eb262710_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-25819 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24615 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.518, evm.TU.LG10.41, evm.TU.LG17.36 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g33860 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-27449 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1504 |
| Salicaceae | Populus euphratica | 1 | populus_peu16302 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132610531, gene-LOC132642284 |
| Solanaceae | Solanum chilense | 1 | SOLCI004778000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107019766, gene-LOC107022591 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14801 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G4351 |
| Zosteraceae | Zostera marina | 2 | Zosma01g19180.v3.1, Zosma02g21970.v3.1 |