Basic Information
Locus ID:
gene-LOC132642216
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 4885724 | 4890156 | - | gene-LOC132642216 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 28,359.19 Da | 62.35 | 65.53 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 16 | 61 | 5.18681E-7 | - |
| Pfam | PF13639 | Ring finger domain | 15 | 61 | 1.0E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 9 | 63 | 6.71E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 68 | 2.3E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 16 | 60 | 2.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 16 | 61 | 12.002429 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47700.2 | - | 0 |
| RefSeq | XP_049354806.1 | E3 ubiquitin-protein ligase IPI1-like [Solanum verrucosum] | 0 |
| O82239 | E3 ubiquitin-protein ligase RFI2 OS=Arabidopsis thaliana OX=3702 GN=RFI2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1U8F3W9 | uncharacterized protein LOC107853665 OS=Capsicum annuum OX=4072 GN=LOC107853665 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132642216 |
| Solanaceae | Solanum chilense | 2 | SOLCI004699400, SOLCI004699500 |