Basic Information
Locus ID:
gene-LOC132641937
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 141077676 | 141082474 | + | gene-LOC132641937 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 25,012.53 Da | 50.47 | 51.71 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 177 | 218 | 2.4E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 172 | 222 | 9.84E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 223 | 4.3E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 178 | 218 | 7.6E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 178 | 218 | 11.235273 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 119 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38895.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009791904.1 | PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Nicotiana sylvestris] | 0 |
| Q8LE94 | E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana OX=3702 GN=At3g02290 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1J6I5R2 | E3 ubiquitin-protein ligase OS=Nicotiana attenuata OX=49451 GN=A4A49_18076 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641937 |
| Solanaceae | Solanum chilense | 1 | SOLCI006537500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018846 |