Basic Information
Locus ID:
gene-LOC132641749
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 135802865 | 135814013 | + | gene-LOC132641749 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 138,201.55 Da | 56.15 | 69.45 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 49 | 176 | 3.56744E-29 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1112 | 1155 | 1.57071E-16 | - |
| CDD | cd12108 | Hr-like | 646 | 801 | 4.89141E-28 | - |
| CDD | cd12108 | Hr-like | 307 | 435 | 5.87097E-19 | - |
| Pfam | PF13639 | Ring finger domain | 1112 | 1154 | 1.9E-6 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 305 | 437 | 1.6E-10 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1160 | 1216 | 2.4E-21 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 984 | 1059 | 1.1E-18 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 46 | 178 | 4.9E-11 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 642 | 739 | 1.4E-6 | IPR012312 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 977 | 1040 | 5.1E-17 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1050 | 1105 | 1.29E-14 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1112 | 1160 | 1.85E-7 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 638 | 866 | 4.2E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1108 | 1156 | 8.2E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 44 | 196 | 8.4E-34 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1183 | 1224 | 9.5E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 305 | 453 | 9.8E-21 | - |
| SMART | SM00184 | ring_2 | 1113 | 1154 | 3.3E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1049 | 1112 | 29.026829 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 977 | 1046 | 26.078772 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1113 | 1155 | 10.940213 | IPR001841 |
| Coils | Coil | Coil | 724 | 744 | - | - |
| Coils | Coil | Coil | 313 | 333 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_049356916.1 | zinc finger protein BRUTUS-like [Solanum verrucosum] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G3B646 | Zinc finger protein BRUTUS OS=Capsicum chinense OX=80379 GN=BC332_27198 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology