Basic Information
Locus ID:
gene-LOC132641495
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Domain of unknown function (DUF569)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 127662824 | 127669513 | + | gene-LOC132641495 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.90 | 84,639.40 Da | 46.98 | 77.16 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04601 | Domain of unknown function (DUF569) | 204 | 345 | 6.9E-65 | IPR007679 |
| Pfam | PF04601 | Domain of unknown function (DUF569) | 1 | 145 | 6.9E-48 | IPR007679 |
| Pfam | PF00098 | Zinc knuckle | 731 | 747 | 1.8E-4 | IPR001878 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 548 | 684 | 2.1E-16 | - |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 208 | 350 | 2.75E-24 | IPR008999 |
| SUPERFAMILY | SSF50405 | Actin-crosslinking proteins | 4 | 149 | 6.28E-19 | IPR008999 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 714 | 749 | 1.92E-7 | IPR036875 |
| Gene3D | G3DSA:2.80.10.50 | - | 212 | 337 | 2.3E-17 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 694 | 750 | 2.5E-6 | - |
| Gene3D | G3DSA:2.80.10.50 | - | 6 | 151 | 5.1E-13 | - |
| SMART | SM00343 | c2hcfinal6 | 731 | 747 | 7.0E-4 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 731 | 747 | 9.916444 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 695 | 723 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27100.1 | Actin cross-linking protein. | 0 |
| RefSeq | XP_049403753.1 | uncharacterized protein LOC125867338 [Solanum stenotomum] | 0 |
| TrEMBL | A0A1U8EWU4 | uncharacterized protein LOC107848173 OS=Capsicum annuum OX=4072 GN=LOC107848173 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology