Basic Information
Locus ID:
gene-LOC132641281
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 119788200 | 119790474 | - | gene-LOC132641281 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 42,605.84 Da | 55.41 | 76.47 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 320 | 359 | 1.0E-7 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 314 | 364 | 4.88E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 50 | 108 | 1.14E-6 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 114 | 236 | 3.92E-14 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 306 | 363 | 4.9E-11 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 91 | 252 | 2.0E-19 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 317 | 359 | 11.101426 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 388 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_019265175.1 | PREDICTED: F-box protein At1g67340 [Nicotiana attenuata] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A314L2L1 | F-box protein OS=Nicotiana attenuata OX=49451 GN=A4A49_02174 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology