Basic Information
Locus ID:
gene-LOC132641229
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
ABC transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 117586090 | 117592623 | - | gene-LOC132641229 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 163,121.61 Da | 37.51 | 105.46 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 585 | 788 | 4.73749E-91 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1199 | 1419 | 1.76163E-123 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 275 | 560 | 3.50154E-85 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 886 | 1176 | 7.89861E-79 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 274 | 539 | 5.1E-21 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1218 | 1366 | 3.1E-33 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 906 | 1128 | 3.3E-26 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 611 | 740 | 2.1E-15 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 887 | 1183 | 5.49E-47 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 265 | 567 | 1.57E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1192 | 1427 | 6.08E-70 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 609 | 801 | 1.63E-47 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 248 | 571 | 7.7E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 608 | 841 | 1.4E-61 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 856 | 1182 | 6.7E-53 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1184 | 1437 | 5.2E-83 | IPR027417 |
| SMART | SM00382 | AAA_5 | 614 | 788 | 2.6E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1227 | 1420 | 3.7E-14 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1201 | 1435 | 18.867674 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 585 | 811 | 19.547941 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 275 | 552 | 31.895987 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 889 | 1164 | 33.939991 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 713 | 727 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_018625908.1 | putative ABC transporter C family member 15 [Nicotiana tomentosiformis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S3XGR7 | ABC-type xenobiotic transporter OS=Nicotiana tabacum OX=4097 GN=LOC107765047 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology