Basic Information
Locus ID:
gene-LOC132640864
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 57675432 | 57704256 | - | gene-LOC132640864 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 64,493.04 Da | 46.14 | 94.53 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 263 | 554 | 3.71841E-52 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 260 | 296 | 6.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 346 | 384 | 0.019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 473 | 511 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 517 | 554 | 3.0E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 306 | 342 | 0.033 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 256 | 554 | 1.53E-64 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 254 | 519 | 6.1E-59 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 520 | 570 | 1.6E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 515 | 555 | 7.3E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 297 | 2.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 428 | 466 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 303 | 342 | 1.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 470 | 512 | 0.069 | IPR001680 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 6.4E-4 | IPR001680 |
| SMART | SM00668 | ctlh | 92 | 149 | 7.3E-4 | IPR006595 |
| SMART | SM00320 | WD40_4 | 386 | 426 | 13.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 265 | 299 | 9.915599 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 310 | 351 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 522 | 564 | 14.886235 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 522 | 557 | 12.051043 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 59 | 91 | 8.477597 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 265 | 299 | 11.878597 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 97 | 149 | 9.679737 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 352 | 386 | 9.372231 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 310 | 347 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 495 | 521 | 9.004632 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 284 | 298 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_006354306.1 | PREDICTED: WD repeat-containing protein 26-like isoform X1 [Solanum tuberosum] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2BU78 | Transducin family protein / WD-40 repeat family protein OS=Solanum chilense OX=4083 GN=EJD97_006063 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology