Basic Information
Locus ID:
gene-LOC132640780
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 27448971 | 27452063 | + | gene-LOC132640780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 10,856.00 Da | 46.85 | 62.63 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 15 | 88 | 2.64953E-47 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 17 | 87 | 1.6E-25 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 4 | 92 | 8.39E-28 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 15 | 95 | 4.4E-39 | - |
| SMART | SM00213 | ubq_7 | 17 | 88 | 6.1E-12 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 15 | 92 | 15.405305 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55160.1 | small ubiquitin-like modifier 2. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. SUMO2 can form SUMO chains through lysine residue 10 during in vitro assays. | 0 |
| RefSeq | XP_009802320.1 | PREDICTED: small ubiquitin-related modifier 2 [Nicotiana sylvestris] | 0 |
| Q9FLP6 | Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana OX=3702 GN=SUMO2 PE=1 SV=1 | 0 | |
| TrEMBL | B8R520 | Small ubiquitin-related modifier OS=Nicotiana benthamiana OX=4100 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology