Basic Information
Locus ID:
gene-LOC132640696
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 21417821 | 21425783 | - | gene-LOC132640696 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 37,553.97 Da | 48.25 | 66.43 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 69 | 107 | 1.35456E-13 | - |
| CDD | cd03829 | Sina | 185 | 313 | 7.16675E-66 | - |
| Pfam | PF03145 | Seven in absentia protein family | 113 | 312 | 3.6E-80 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 124 | 316 | 2.55E-49 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 65 | 111 | 8.7E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 123 | 1.1E-7 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 124 | 179 | 6.9E-17 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 182 | 312 | 6.7E-39 | IPR008974 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 124 | 184 | 14.194044 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 71 | 107 | 9.287877 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_016581172.1 | E3 ubiquitin-protein ligase SINAT5 [Capsicum annuum] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8HCL3 | RING-type E3 ubiquitin transferase OS=Capsicum annuum OX=4072 GN=T459_14620 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology